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WE035 – Simplified metadata
Dataset
- Database Code
- WE035
- Title
- Multi-locus DNA metabarcoding of western spotted skunk diet in the McKenzie River Ranger District of the Willamette National Forest from 2017-2019
- Abstract
- There are increasing concerns about the declining population trends of small mammalian carnivores around the world. Their conservation and management is often challenging due to limited knowledge about their ecology and natural history. To address one of these deficiencies for western spotted skunks (Spilogale gracilis), we investigated their diet in the Oregon Cascades of the Pacific Northwest during 2017 –2019. We collected 130 spotted skunk scats opportunistically and with detection dog teams and identified prey items using DNA metabarcoding and mechanical sorting. Western spotted skunk diet consisted of invertebrates such as wasps, millipedes, and gastropods, vertebrates such as small mammals, amphibians, and birds, and plants such as Gaultheria, Rubus, and Vaccinium. Diet also consisted of items such as black-tailed deer that were likely scavenged. Comparison in diet by season revealed that spotted skunks consumed more insects during the dry season (June –August), particularly wasps (75% of scats in the dry season), and marginally more mammals during the wet season(September –May). We observed similar diet in areas with no record of human disturbance and areas with a history of logging at most spatial scales, but scats collected in areas with older forest within a skunk’s home range (1 km buffer) were more likely to contain insects. Western spotted skunks provide food web linkages between aquatic, terrestrial, and arboreal systems and serve functional roles of seed dispersal and scavenging. Due to their diverse diet and prey-switching, western spotted skunks may dampen the effects of irruptions of prey, such as wasps during dry springs and summers. By studying the natural history of western spotted skunks in the Pacific Northwest forests while they are still abundant, we provide key information necessary to achieve the conservation goal of keeping this common species common.
- Keywords
- food webs; predators; genetics; predation; forest disturbance; timber harvest; terrestrial ecosystems; forest ecosystems; animals; invertebrates; vertebrates; salamanders; birds; mammals; plants; H. J. Andrews Experimental Forest (AND)
- Date begin
- 2017-08-03
- Date end
- 2019-01-25
- Principal Investigator
- Taal Levi Damon Lesmeister
Entities
- Prey information for each scat
- Summarized information about prey composition for each scat
- Location information for each scat
1. Prey information for each scat - Attribute list
| Attribute | Type | Domain | Minimum | Maximum | Unit |
|---|---|---|---|---|---|
| DBCODE | varchar | enum | |||
| ENTITY | numeric(1) | range | 1.0000 | 1.0000 | number |
| SCAT_ID | varchar | enum | |||
| GRID_NUMBER | varchar | enum | |||
| SCAT_NUMBER | numeric(1) | range | 1.0000 | 927.0000 | number |
| COLLECTION_TYPE | varchar | enum | |||
| COLLECTION_DATETIME | datetime | freetext | |||
| LOCUS | varchar | enum | |||
| PREY_SUPERKINGDOM | varchar | enum | |||
| PREY_KINGDOM | varchar | enum | |||
| PREY_PHYLUM | varchar | enum | |||
| PREY_SUBPHYLUM | varchar | enum | |||
| PREY_CLASS | varchar | enum | |||
| PREY_ORDER | varchar | enum | |||
| PREY_FAMILY | varchar | enum | |||
| PREY_GENUS | varchar | enum | |||
| PREY_SPECIES | varchar | enum | |||
| CARNIVORE | varchar | enum | |||
| SEQ | varchar | freetext | |||
| NUMREPS | numeric(1) | range | 2.0000 | 9.0000 | number |
| NUMREADS | numeric(1) | range | 7.0000 | 455460.3000 | number |
| TOTALREADS | numeric(1) | range | 34.7000 | 551050.0000 | number |
| RRA | numeric(1) | range | 0.0088 | 1.0000 | number |
| PIDMATCH | numeric(1) | range | 82.3300 | 99.5400 | percent |
| QCOVER | numeric(1) | range | 18.0000 | 100.0000 | percent |
| BITSCORE | numeric(1) | range | 56.2800 | 330.2500 | number |
2. Summarized information about prey composition for each scat - Attribute list
| Attribute | Type | Domain | Minimum | Maximum | Unit |
|---|---|---|---|---|---|
| DBCODE | varchar | enum | |||
| ENTITY | numeric(1) | range | 2.0000 | 2.0000 | number |
| SCAT_ID | varchar | enum | |||
| GRID_NUMBER | varchar | enum | |||
| SCAT_NUMBER | numeric(1) | range | 1.0000 | 927.0000 | number |
| COLLECTION_TYPE | varchar | enum | |||
| COLLECTION_DATETIME | datetime | freetext | |||
| SEASON | varchar | enum | |||
| AMPHIBIA | varchar | enum | |||
| AVES | varchar | enum | |||
| MAMMALIA | varchar | enum | |||
| REPTILIA | varchar | enum | |||
| GASTROPODA | varchar | enum | |||
| ARACHNIDA | varchar | enum | |||
| MYRIAPODA | varchar | enum | |||
| INSECTA | varchar | enum | |||
| STREPTOPHYTA | varchar | enum |
3. Location information for each scat - Attribute list
| Attribute | Type | Domain | Minimum | Maximum | Unit |
|---|---|---|---|---|---|
| DBCODE | varchar | enum | |||
| ENTITY | numeric(1) | range | 3.0000 | 3.0000 | number |
| SCAT_ID | varchar | enum | |||
| GRID_NUMBER | varchar | enum | |||
| SCAT_NUMBER | numeric(1) | range | 1.0000 | 927.0000 | number |
| COLLECTION_TYPE | varchar | enum | |||
| COLLECTION_DATETIME | datetime | freetext | |||
| EASTING | numeric(1) | range | 559441.0000 | 569599.0000 | meters |
| NORTHING | numeric(1) | range | 4892446.0000 | 4904080.0000 | meters |
| ELEVATION | numeric(1) | range | 438.4000 | 1499.9000 | meters |
| YR_LOGGED | numeric(1) | range | 1946.0000 | 1990.0000 | year (yyyy) |
| YRSSINCEDI | numeric(1) | range | 28.0000 | 200.0000 | number |
| TREATMENT | varchar | enum | |||
| CLASS | varchar | enum | |||
| HJA | varchar | enum | |||
| LOGGED | varchar | enum | |||
| VALUE_R100 | numeric(1) | range | 0.2700 | 3.3300 | hectares |
| PERCENTAGE_INSIDE_R100 | numeric(1) | range | 8.6000 | 106.0700 | percent |
| VALUE_R500 | numeric(1) | range | 7.9200 | 70.7400 | hectares |
| PERCENTAGE_INSIDE_R500 | numeric(1) | range | 10.0900 | 90.1300 | percent |
| VALUE_R1000 | numeric(1) | range | 26.5500 | 253.8900 | hectares |
| PERCENTAGE_INSIDE_R1000 | numeric(1) | range | 8.4600 | 80.8700 | percent |
| VALUE_R5000 | numeric(1) | range | 1191.2400 | 2945.8800 | hectares |
| PERCENTAGE_INSIDE_R5000 | numeric(1) | range | 15.1800 | 37.5300 | percent |
Attribute definitions
- AMPHIBIA
- indicates whether or not the taxonomic class Amphibia was detected in scat sample
- ARACHNIDA
- indicates whether or not the taxonomic class Arachnida was detected in scat sample
- AVES
- indicates whether or not the taxonomic class Aves was detected in scat sample
- BITSCORE
- Bit score: measures sequence similarity independent of query sequence length and database size and is normalized based on the rawpairwise alignment score
- CARNIVORE
- assignment of scat defecator based on DNA metabarcoding
- CLASS
- time since logging classified into 3 groups
- COLLECTION_DATETIME
- Date and time scat was collected (time was not recorded for collection_tpe=MT); in Pacific Standard Time (PST)
- COLLECTION_TYPE
- Defines collection method and time frame
- DBCODE
- FSDB Database Code
- EASTING
- Easting in NAD 83 UTM Zone 10
- ELEVATION
- elevation of collection site above sea level; derived from DEM using LiDAR, converted from feet
- ENTITY
- Entity number
- GASTROPODA
- indicates whether or not the taxonomic class Gastropoda was detected in scat sample
- GRID_NUMBER
- Sampling grid (3Km x 3Km) cell number
- HJA
- indicates whether the site is within or outside of the HJ Andrews Experimental Forest boundary
- INSECTA
- indicates whether or not the taxonomic class Insecta was detected in scat sample
- LOCUS
- Region of genome used to barcode potential prey items: COI, 12s, manual, trnL
- LOGGED
- indicates whether the location of scat collected was within or outside of a logged area
- MAMMALIA
- indicates whether or not the taxonomic class Mammalia was detected in scat sample
- MYRIAPODA
- indicates whether or not the taxonomic class Myriapoda was detected in scat sample
- NORTHING
- Northing in NAD 83 UTM Zone 10
- NUMREADS
- Number of reads of unique sequences in each sample. Mean number of reads calculated for sequences that were in multiple replicates.
- NUMREPS
- Number of replicates that returned the same sequence (all samples run in triplicate)
- PERCENTAGE_INSIDE_R100
- percent area within 100 m of the scat location that was logged
- PERCENTAGE_INSIDE_R500
- percent area within 500 m of the scat location that was logged
- PERCENTAGE_INSIDE_R1000
- perent area within 1 km of the scat location that was logged
- PERCENTAGE_INSIDE_R5000
- percent area within 5 km of the scat location that was logged
- PIDMATCH
- Percent match of sequence with sequence in the GenBank database
- PREY_CLASS
- Class of prey item detected within the scat
- PREY_FAMILY
- Family of prey item detected within the scat
- PREY_GENUS
- Genus of prey item detected within the scat
- PREY_KINGDOM
- Kingdom of prey item detected within the scat
- PREY_ORDER
- Order of prey item detected within the scat
- PREY_PHYLUM
- Phylum of prey item detected within the scat
- PREY_SPECIES
- Species of prey item detected within the scat
- PREY_SUBPHYLUM
- Subphylum of prey item detected within the scat
- PREY_SUPERKINGDOM
- Superkingdom of prey item detected within the scat
- QCOVER
- Query coverage: percentage of the query sequence (your specimen) that overlaps the reference sequence
- REPTILIA
- indicates whether or not the taxonomic class Reptilia was detected in scat sample
- RRA
- Relative read abundance: calculated by dividing the numreads by totalreads per sample
- SCAT_ID
- Unique sample code representing collection_type, grid_number, scat_number and its location
- SCAT_NUMBER
- Scat number within collection type
- SEASON
- Season when sample collected
- SEQ
- DNA barcode sequence used to identify species.
- STREPTOPHYTA
- indicates whether or not the taxonomic class Streptophyta was detected in scat sample
- TOTALREADS
- Sum of all numreads for a sample
- TREATMENT
- type of logging that occurred on stand from historical records
- VALUE_R100
- area within 100 m of the scat location that was logged
- VALUE_R500
- area within 500 m of the scat location that was logged
- VALUE_R1000
- area within 1 km of the scat location that was logged
- VALUE_R5000
- area within 5 km of the scat location that was logged
- YRSSINCEDI
- years since stand disturbance via logging; stands with no logging record were assigned 200 years.
- YR_LOGGED
- year stand was logged (if logged) from historical records
Enumerated domains
Enumerated domain for attribute: DBCODE
| Code | Description |
|---|---|
| WE035 | FSDB Database Study Code WE035 |
Enumerated domain for attribute: SCAT_ID
| Code | Description |
|---|---|
| F15-133 | WE035 unique location code F15-133 for collected scat sample within detection grid cell 15 |
| F15-134 | WE035 unique location code F15-134 for collected scat sample within detection grid cell 15 |
| F15-136 | WE035 unique location code F15-136 for collected scat sample within detection grid cell 15 |
| F15-137 | WE035 unique location code F15-137 for collected scat sample within detection grid cell 15 |
| F15-50 | WE035 unique location code F15-50 for collected scat sample within detection grid cell 15 |
| F22-101 | WE035 unique location code F22-101 for collected scat sample within detection grid cell 22 |
| F22-143 | WE035 unique location code F22-143 for collected scat sample within detection grid cell 22 |
| F22-18 | WE035 unique location code F22-18 for collected scat sample within detection grid cell 22 |
| F22-196 | WE035 unique location code F22-196 for collected scat sample within detection grid cell 22 |
| F22-197 | WE035 unique location code F22-197 for collected scat sample within detection grid cell 22 |
| F22-198 | WE035 unique location code F22-198 for collected scat sample within detection grid cell 22 |
| F22-199 | WE035 unique location code F22-199 for collected scat sample within detection grid cell 22 |
| F22-22 | WE035 unique location code F22-22 for collected scat sample within detection grid cell 22 |
| F22-224 | WE035 unique location code F22-224 for collected scat sample within detection grid cell 22 |
| F22-226 | WE035 unique location code F22-226 for collected scat sample within detection grid cell 22 |
| F22-300 | WE035 unique location code F22-300 for collected scat sample within detection grid cell 22 |
| F22-301 | WE035 unique location code F22-301 for collected scat sample within detection grid cell 22 |
| F22-302 | WE035 unique location code F22-302 for collected scat sample within detection grid cell 22 |
| F22-303 | WE035 unique location code F22-303 for collected scat sample within detection grid cell 22 |
| F22-307 | WE035 unique location code F22-307 for collected scat sample within detection grid cell 22 |
| F22-70 | WE035 unique location code F22-70 for collected scat sample within detection grid cell 22 |
| F29-71 | WE035 unique location code F29-71 for collected scat sample within detection grid cell 29 |
| F29-73 | WE035 unique location code F29-73 for collected scat sample within detection grid cell 29 |
| F29-74 | WE035 unique location code F29-74 for collected scat sample within detection grid cell 29 |
| F29-75 | WE035 unique location code F29-75 for collected scat sample within detection grid cell 29 |
| F29-76 | WE035 unique location code F29-76 for collected scat sample within detection grid cell 29 |
| F30-112 | WE035 unique location code F30-112 for collected scat sample within detection grid cell 30 |
| F30-113 | WE035 unique location code F30-113 for collected scat sample within detection grid cell 30 |
| F30-114 | WE035 unique location code F30-114 for collected scat sample within detection grid cell 30 |
| F30-115 | WE035 unique location code F30-115 for collected scat sample within detection grid cell 30 |
| F30-116 | WE035 unique location code F30-116 for collected scat sample within detection grid cell 30 |
| F30-117 | WE035 unique location code F30-117 for collected scat sample within detection grid cell 30 |
| F30-118 | WE035 unique location code F30-118 for collected scat sample within detection grid cell 30 |
| F30-119 | WE035 unique location code F30-119 for collected scat sample within detection grid cell 30 |
| F30-120 | WE035 unique location code F30-120 for collected scat sample within detection grid cell 30 |
| F30-121 | WE035 unique location code F30-121 for collected scat sample within detection grid cell 30 |
| F30-123 | WE035 unique location code F30-123 for collected scat sample within detection grid cell 30 |
| F30-138 | WE035 unique location code F30-138 for collected scat sample within detection grid cell 30 |
| F30-140 | WE035 unique location code F30-140 for collected scat sample within detection grid cell 30 |
| F30-142 | WE035 unique location code F30-142 for collected scat sample within detection grid cell 30 |
| F30-39 | WE035 unique location code F30-39 for collected scat sample within detection grid cell 30 |
| F36-173 | WE035 unique location code F36-173 for collected scat sample within detection grid cell 36 |
| F37-150 | WE035 unique location code F37-150 for collected scat sample within detection grid cell 37 |
| F37-151 | WE035 unique location code F37-151 for collected scat sample within detection grid cell 37 |
| F37-152 | WE035 unique location code F37-152 for collected scat sample within detection grid cell 37 |
| F37-153 | WE035 unique location code F37-153 for collected scat sample within detection grid cell 37 |
| F37-154 | WE035 unique location code F37-154 for collected scat sample within detection grid cell 37 |
| F37-155 | WE035 unique location code F37-155 for collected scat sample within detection grid cell 37 |
| F37-156 | WE035 unique location code F37-156 for collected scat sample within detection grid cell 37 |
| F37-158 | WE035 unique location code F37-158 for collected scat sample within detection grid cell 37 |
| F37-159 | WE035 unique location code F37-159 for collected scat sample within detection grid cell 37 |
| F37-162 | WE035 unique location code F37-162 for collected scat sample within detection grid cell 37 |
| F37-192 | WE035 unique location code F37-192 for collected scat sample within detection grid cell 37 |
| F37-194 | WE035 unique location code F37-194 for collected scat sample within detection grid cell 37 |
| F37-241 | WE035 unique location code F37-241 for collected scat sample within detection grid cell 37 |
| F37-242 | WE035 unique location code F37-242 for collected scat sample within detection grid cell 37 |
| F37-243 | WE035 unique location code F37-243 for collected scat sample within detection grid cell 37 |
| F37-51 | WE035 unique location code F37-51 for collected scat sample within detection grid cell 37 |
| F37-6 | WE035 unique location code F37-6 for collected scat sample within detection grid cell 37 |
| F38-46 | WE035 unique location code F38-46 for collected scat sample within detection grid cell 38 |
| F38-47 | WE035 unique location code F38-47 for collected scat sample within detection grid cell 38 |
| MT284 | WE035 unique location code MT284 for manually collected scat samples |
| MT285 | WE035 unique location code MT285 for manually collected scat samples |
| MT287 | WE035 unique location code MT287 for manually collected scat samples |
| MT288 | WE035 unique location code MT288 for manually collected scat samples |
| MT289 | WE035 unique location code MT289 for manually collected scat samples |
| MT296 | WE035 unique location code MT296 for manually collected scat samples |
| MT315 | WE035 unique location code MT315 for manually collected scat samples |
| MT37 | WE035 unique location code MT37 for manually collected scat samples |
| MT383 | WE035 unique location code MT383 for manually collected scat samples |
| MT408 | WE035 unique location code MT408 for manually collected scat samples |
| MT431 | WE035 unique location code MT431 for manually collected scat samples |
| MT432 | WE035 unique location code MT432 for manually collected scat samples |
| MT433 | WE035 unique location code MT433 for manually collected scat samples |
| MT906 | WE035 unique location code MT906 for manually collected scat samples |
| MT907 | WE035 unique location code MT907 for manually collected scat samples |
| MT908 | WE035 unique location code MT908 for manually collected scat samples |
| MT909 | WE035 unique location code MT909 for manually collected scat samples |
| MT916 | WE035 unique location code MT916 for manually collected scat samples |
| MT918 | WE035 unique location code MT918 for manually collected scat samples |
| MT927 | WE035 unique location code MT927 for manually collected scat samples |
| S22-117 | WE035 unique location code S22-117 for collected scat sample within detection grid cell 22 |
| S22-118 | WE035 unique location code S22-118 for collected scat sample within detection grid cell 22 |
| S22-119 | WE035 unique location code S22-119 for collected scat sample within detection grid cell 22 |
| S22-154 | WE035 unique location code S22-154 for collected scat sample within detection grid cell 22 |
| S22-155 | WE035 unique location code S22-155 for collected scat sample within detection grid cell 22 |
| S22-156 | WE035 unique location code S22-156 for collected scat sample within detection grid cell 22 |
| S22-157 | WE035 unique location code S22-157 for collected scat sample within detection grid cell 22 |
| S22-158 | WE035 unique location code S22-158 for collected scat sample within detection grid cell 22 |
| S22-159 | WE035 unique location code S22-159 for collected scat sample within detection grid cell 22 |
| S22-160 | WE035 unique location code S22-160 for collected scat sample within detection grid cell 22 |
| S22-161 | WE035 unique location code S22-161 for collected scat sample within detection grid cell 22 |
| S22-4 | WE035 unique location code S22-4 for collected scat sample within detection grid cell 22 |
| S22-5 | WE035 unique location code S22-5 for collected scat sample within detection grid cell 22 |
| S22-6 | WE035 unique location code S22-6 for collected scat sample within detection grid cell 22 |
| S22-74 | WE035 unique location code S22-74 for collected scat sample within detection grid cell 22 |
| S30-106 | WE035 unique location code S30-106 for collected scat sample within detection grid cell 30 |
| S30-107 | WE035 unique location code S30-107 for collected scat sample within detection grid cell 30 |
| S30-108 | WE035 unique location code S30-108 for collected scat sample within detection grid cell 30 |
| S30-109 | WE035 unique location code S30-109 for collected scat sample within detection grid cell 30 |
| S30-54 | WE035 unique location code S30-54 for collected scat sample within detection grid cell 30 |
| S30-69 | WE035 unique location code S30-69 for collected scat sample within detection grid cell 30 |
| S30-71 | WE035 unique location code S30-71 for collected scat sample within detection grid cell 30 |
| S30-72 | WE035 unique location code S30-72 for collected scat sample within detection grid cell 30 |
| S36-55 | WE035 unique location code S36-55 for collected scat sample within detection grid cell 36 |
| S36-56 | WE035 unique location code S36-56 for collected scat sample within detection grid cell 36 |
| S36-57 | WE035 unique location code S36-57 for collected scat sample within detection grid cell 36 |
| S37-1 | WE035 unique location code S37-1 for collected scat sample within detection grid cell 37 |
| S37-75 | WE035 unique location code S37-75 for collected scat sample within detection grid cell 37 |
| S37-76 | WE035 unique location code S37-76 for collected scat sample within detection grid cell 37 |
| S37-77 | WE035 unique location code S37-77 for collected scat sample within detection grid cell 37 |
| S37-78 | WE035 unique location code S37-78 for collected scat sample within detection grid cell 37 |
| S44-100 | WE035 unique location code S44-100 for collected scat sample within detection grid cell 44 |
| S44-101 | WE035 unique location code S44-101 for collected scat sample within detection grid cell 44 |
| S44-16 | WE035 unique location code S44-16 for collected scat sample within detection grid cell 44 |
| S44-17 | WE035 unique location code S44-17 for collected scat sample within detection grid cell 44 |
| S44-18 | WE035 unique location code S44-18 for collected scat sample within detection grid cell 44 |
| S44-97 | WE035 unique location code S44-97 for collected scat sample within detection grid cell 44 |
| S44-98 | WE035 unique location code S44-98 for collected scat sample within detection grid cell 44 |
| S45-126 | WE035 unique location code S45-126 for collected scat sample within detection grid cell 45 |
| S45-127 | WE035 unique location code S45-127 for collected scat sample within detection grid cell 45 |
| S45-128 | WE035 unique location code S45-128 for collected scat sample within detection grid cell 45 |
| S45-129 | WE035 unique location code S45-129 for collected scat sample within detection grid cell 45 |
| S45-130 | WE035 unique location code S45-130 for collected scat sample within detection grid cell 45 |
| S45-132 | WE035 unique location code S45-132 for collected scat sample within detection grid cell 45 |
| S45-133 | WE035 unique location code S45-133 for collected scat sample within detection grid cell 45 |
| S45-134 | WE035 unique location code S45-134 for collected scat sample within detection grid cell 45 |
| S45-135 | WE035 unique location code S45-135 for collected scat sample within detection grid cell 45 |
Enumerated domain for attribute: GRID_NUMBER
| Code | Description |
|---|---|
| 15 | WE035 scat detection grid cell number 15; see scat detection map |
| 22 | WE035 scat detection grid cell number 22; see scat detection map |
| 29 | WE035 scat detection grid cell number 29; see scat detection map |
| 30 | WE035 scat detection grid cell number 30; see scat detection map |
| 36 | WE035 scat detection grid cell number 36; see scat detection map |
| 37 | WE035 scat detection grid cell number 37; see scat detection map |
| 38 | WE035 scat detection grid cell number 38; see scat detection map |
| 44 | WE035 scat detection grid cell number 44; see scat detection map |
| 45 | WE035 scat detection grid cell number 45; see scat detection map |
| MT | WE035 manual, opportunistic scat collection within study area |
Enumerated domain for attribute: COLLECTION_TYPE
| Code | Description |
|---|---|
| S | samples collected by Conservation K9s during summer 2018 (June-August) |
| F | samples collected by Conservation K9s during fall 2018 (October-November) |
| MT | samples collected opportunistically during field work from 2017-2019 |
Enumerated domain for attribute: LOCUS
| Code | Description |
|---|---|
| COI | COI locus of mitochondrial DNA that was used to barcode potential invertebrate prey items |
| 12s | 12s locus of mitochondrial DNA that was used to barcode potential vertebrate prey items |
| manual | scats that were manually sorted for coarse identification of prey items |
| trnL | trnL locus of chloroplast DNA that was used to barcode potential plant diet items |
Enumerated domain for attribute: PREY_SUPERKINGDOM
| Code | Description |
|---|---|
| Eukaryota | All Organisms |
Enumerated domain for attribute: PREY_KINGDOM
| Code | Description |
|---|---|
| Metazoa | Animalia |
| Viridiplantae | Plantae |
| Fungi | Fungi |
Enumerated domain for attribute: PREY_PHYLUM
| Code | Description |
|---|---|
| Arthropoda | Arthropoda |
| Streptophyta | Streptophyta |
| Ascomycota | Ascomycota |
| Chordata | Chordata |
| Mollusca | Mollusca |
| Rotifera | Rotifera |
Enumerated domain for attribute: PREY_SUBPHYLUM
| Code | Description |
|---|---|
| Streptophytina | Streptophytina |
| Pezizomycotina | Pezizomycotina |
| Craniata | Craniata |
| Myriapoda | Myriapoda |
| Hexapoda | Hexapoda |
| Chelicerata | Chelicerata |
Enumerated domain for attribute: PREY_CLASS
| Code | Description |
|---|---|
| Magnoliopsida | Magnoliopsida |
| Pinopsida | Pinopsida |
| Polypodiopsida | Polypodiopsida |
| Sordariomycetes | Sordariomycetes |
| Amphibia | Amphibia |
| Aves | Aves |
| Mammalia | Mammalia |
| Arachnida | Arachnida |
| Gastropoda | Gastropoda |
| Diplopoda | Diplopoda |
| Chilopoda | Chilopoda |
| Insecta | Insecta |
| Bdelloidea | Bdelloidea |
| Eurotatoria | Eurotatoria |
| Reptilia | Reptilia |
Enumerated domain for attribute: PREY_ORDER
| Code | Description |
|---|---|
| Sapindales | Sapindales |
| Apiales | Apiales |
| Polypodiales | Polypodiales |
| Asterales | Asterales |
| Ranunculales | Ranunculales |
| Fagales | Fagales |
| Dipsacales | Dipsacales |
| Solanales | Solanales |
| Cornales | Cornales |
| Rosales | Rosales |
| Pinales | Pinales |
| Ericales | Ericales |
| Fabales | Fabales |
| Malvales | Malvales |
| Boraginales | Boraginales |
| Oxalidales | Oxalidales |
| Poales | Poales |
| Saxifragales | Saxifragales |
| Malpighiales | Malpighiales |
| Hypocreales | Hypocreales |
| Anura | Anura |
| Caudata | Caudata |
| Galliformes | Galliformes |
| Apodiformes | Apodiformes |
| Piciformes | Piciformes |
| Passeriformes | Passeriformes |
| Accipitriformes | Accipitriformes |
| Rodentia | Rodentia |
| Lagomorpha | Lagomorpha |
| Artiodactyla | Artiodactyla |
| Eulipotyphla | Eulipotyphla |
| Araneae | Araneae |
| Scolopendromorpha | Scolopendromorpha |
| Coleoptera | Coleoptera |
| Hemiptera | Hemiptera |
| Hymenoptera | Hymenoptera |
| Lepidoptera | Lepidoptera |
| Orthoptera | Orthoptera |
| Diptera | Diptera |
| Stylommatophora | Stylommatophora |
| Adinetida | Adinetida |
| Squamata | Squamata |
Enumerated domain for attribute: PREY_FAMILY
| Code | Description |
|---|---|
| Araliaceae | Araliaceae |
| Asteraceae | Asteraceae |
| Berberidaceae | Berberidaceae |
| Betulaceae | Betulaceae |
| Blechnaceae | Blechnaceae |
| Caprifoliaceae | Caprifoliaceae |
| Convolvulaceae | Convolvulaceae |
| Cornaceae | Cornaceae |
| Dryopteridaceae | Dryopteridaceae |
| Ericaceae | Ericaceae |
| Fabaceae | Fabaceae |
| Fagaceae | Fagaceae |
| Hydrophyllaceae | Hydrophyllaceae |
| Malvaceae | Malvaceae |
| Oxalidaceae | Oxalidaceae |
| Pinaceae | Pinaceae |
| Poaceae | Poaceae |
| Ranunculaceae | Ranunculaceae |
| Rhamnaceae | Rhamnaceae |
| Rosaceae | Rosaceae |
| Salicaceae | Salicaceae |
| Saxifragaceae | Saxifragaceae |
| Solanaceae | Solanaceae |
| Sapindaceae | Sapindaceae |
| Adoxaceae | Adoxaceae |
| Athyriaceae | Athyriaceae |
| Nectriaceae | Nectriaceae |
| Plethodontidae | Plethodontidae |
| Hylidae | Hylidae |
| Ambystomatidae | Ambystomatidae |
| Rhyacotritonidae | Rhyacotritonidae |
| Salamandridae | Salamandridae |
| Cathartidae | Cathartidae |
| Phasianidae | Phasianidae |
| Trochilidae | Trochilidae |
| Picidae | Picidae |
| Turdidae | Turdidae |
| Motacillidae | Motacillidae |
| Bombycillidae | Bombycillidae |
| Thraupidae | Thraupidae |
| Passerellidae | Passerellidae |
| Sciuridae | Sciuridae |
| Bovidae | Bovidae |
| Cervidae | Cervidae |
| Soricidae | Soricidae |
| Cricetidae | Cricetidae |
| Leporidae | Leporidae |
| Talpidae | Talpidae |
| Araneidae | Araneidae |
| Theridiidae | Theridiidae |
| Cryptopidae | Cryptopidae |
| Rhaphidophoridae | Rhaphidophoridae |
| Cecidomyiidae | Cecidomyiidae |
| Chrysididae | Chrysididae |
| Cicadellidae | Cicadellidae |
| Ichneumonidae | Ichneumonidae |
| Lasiocampidae | Lasiocampidae |
| Psilidae | Psilidae |
| Staphylinidae | Staphylinidae |
| Vespidae | Vespidae |
| Arionidae | Arionidae |
| Haplotrematidae | Haplotrematidae |
| Polygyridae | Polygyridae |
| Adinetidae | Adinetidae |
Enumerated domain for attribute: PREY_GENUS
| Code | Description |
|---|---|
| Acer | Acer |
| Alnus | Alnus |
| Arachis | Arachis |
| Aralia | Aralia |
| Arctostaphylos | Arctostaphylos |
| Athyrium | Athyrium |
| Avena | Avena |
| Berberis | Berberis |
| Blechnum | Blechnum |
| Ceanothus | Ceanothus |
| Convolvulus | Convolvulus |
| Coptis | Coptis |
| Cornus | Cornus |
| Corylus | Corylus |
| Cytisus | Cytisus |
| Dryopteris | Dryopteris |
| Erigeron | Erigeron |
| Festuca | Festuca |
| Fragaria | Fragaria |
| Frangula | Frangula |
| Gaultheria | Gaultheria |
| Hydrophyllum | Hydrophyllum |
| Linnaea | Linnaea |
| Oemleria | Oemleria |
| Oxalis | Oxalis |
| Polystichum | Polystichum |
| Populus | Populus |
| Prunus | Prunus |
| Pseudotsuga | Pseudotsuga |
| Pyrola | Pyrola |
| Quercus | Quercus |
| Rhododendron | Rhododendron |
| Rubus | Rubus |
| Salix | Salix |
| Sambucus | Sambucus |
| Sorbus | Sorbus |
| Spiraea | Spiraea |
| Taraxacum | Taraxacum |
| Tolmiea | Tolmiea |
| Tsuga | Tsuga |
| Vaccinium | Vaccinium |
| Capsicum | Capsicum |
| Glycine | Glycine |
| Neonectria | Neonectria |
| Ambystoma | Ambystoma |
| Aneides | Aneides |
| Plethodon | Plethodon |
| Rhyacotriton | Rhyacotriton |
| Taricha | Taricha |
| Pseudacris | Pseudacris |
| Cathartes | Cathartes |
| Bonasa | Bonasa |
| Selasphorus | Selasphorus |
| Catharus | Catharus |
| Turdus | Turdus |
| Anthus | Anthus |
| Bombycilla | Bombycilla |
| Piranga | Piranga |
| Junco | Junco |
| Dryobates | Dryobates |
| Glaucomys | Glaucomys |
| Lepus | Lepus |
| Microtus | Microtus |
| Neurotrichus | Neurotrichus |
| Odocoileus | Odocoileus |
| Scapanus | Scapanus |
| Sorex | Sorex |
| Bos | Bos |
| Myodes | Myodes |
| Neotamias | Neotamias |
| Araneus | Araneus |
| Steatoda | Steatoda |
| Scolopocryptops | Scolopocryptops |
| Macropsis | Macropsis |
| Pristoceuthophilus | Pristoceuthophilus |
| Tolype | Tolype |
| Vespula | Vespula |
| Ceratochrysis | Ceratochrysis |
| Deinopteroloma | Deinopteroloma |
| Prophysaon | Prophysaon |
| Haplotrema | Haplotrema |
| Vespericola | Vespericola |
| Adineta | Adineta |
Enumerated domain for attribute: PREY_SPECIES
| Code | Description |
|---|---|
| Alnus alnobetula | Alnus alnobetula |
| Alnus incana | Alnus incana |
| Arachis hypogaea | Arachis hypogaea |
| Aralia californica | Aralia californica |
| Athyrium brevifrons | Athyrium brevifrons |
| Avena nuda | Avena nuda |
| Berberis wallichiana | Berberis wallichiana |
| Ceanothus americanus | Ceanothus americanus |
| Ceanothus pumilus | Ceanothus pumilus |
| Coptis quinquesecta | Coptis quinquesecta |
| Cornus kousa | Cornus kousa |
| Cornus canadensis | Cornus canadensis |
| Corylus cornuta | Corylus cornuta |
| Cytisus striatus | Cytisus striatus |
| Erigeron cascadensis | Erigeron cascadensis |
| Festuca altissima | Festuca altissima |
| Fragaria vesca | Fragaria vesca |
| Frangula purshiana | Frangula purshiana |
| Hydrophyllum canadense | Hydrophyllum canadense |
| Linnaea borealis | Linnaea borealis |
| Oemleria cerasiformis | Oemleria cerasiformis |
| Oxalis tuberosa | Oxalis tuberosa |
| Polystichum vestitum | Polystichum vestitum |
| Polystichum weimingii | Polystichum weimingii |
| Populus mexicana | Populus mexicana |
| Populus suaveolens | Populus suaveolens |
| Prunus spinosa | Prunus spinosa |
| Pseudotsuga menziesii | Pseudotsuga menziesii |
| Pyrola aphylla | Pyrola aphylla |
| Quercus pubescens | Quercus pubescens |
| Rhododendron aureum | Rhododendron aureum |
| Rhododendron ungernii | Rhododendron ungernii |
| Rubus occidentalis | Rubus occidentalis |
| Rubus saxatilis | Rubus saxatilis |
| Salix zygostemon | Salix zygostemon |
| Sambucus williamsii | Sambucus williamsii |
| Spiraea pubescens | Spiraea pubescens |
| Taraxacum officinale | Taraxacum officinale |
| Tolmiea menziesii | Tolmiea menziesii |
| Tsuga heterophylla | Tsuga heterophylla |
| Capsicum pubescens | Capsicum pubescens |
| Neonectria ditissima | Neonectria ditissima |
| Aneides ferreus | Aneides ferreus |
| Plethodon dunni | Plethodon dunni |
| Taricha granulosa | Taricha granulosa |
| Rhyacotriton cascadae | Rhyacotriton cascadae |
| Pseudacris regilla | Pseudacris regilla |
| Cathartes aura | Cathartes aura |
| Bonasa umbellus | Bonasa umbellus |
| Selasphorus rufus | Selasphorus rufus |
| Catharus ustulatus | Catharus ustulatus |
| Turdus migratorius | Turdus migratorius |
| Anthus rubescens | Anthus rubescens |
| Bombycilla cedrorum | Bombycilla cedrorum |
| Piranga ludoviciana | Piranga ludoviciana |
| Junco hyemalis | Junco hyemalis |
| Dryobates pubescens | Dryobates pubescens |
| Lepus americanus | Lepus americanus |
| Microtus oregoni | Microtus oregoni |
| Neurotrichus gibbsii | Neurotrichus gibbsii |
| Odocoileus hemionus | Odocoileus hemionus |
| Scapanus orarius | Scapanus orarius |
| Sorex trowbridgii | Sorex trowbridgii |
| Bos taurus | Bos taurus |
| Neotamias townsendii | Neotamias townsendii |
| Glaucomys oregonensis | Glaucomys oregonensis |
| Araneus saevus | Araneus saevus |
| Steatoda bipunctata | Steatoda bipunctata |
| Scolopocryptops capillipedatus | Scolopocryptops capillipedatus |
| Pristoceuthophilus cercalis | Pristoceuthophilus cercalis |
| Tolype dayi | Tolype dayi |
| Vespula consobrina | Vespula consobrina |
| Deinopteroloma subcostatum | Deinopteroloma subcostatum |
| Prophysaon obscurum | Prophysaon obscurum |
| Adineta gracilis | Adineta gracilis |
| Adineta vaga | Adineta vaga |
Enumerated domain for attribute: CARNIVORE
| Code | Description |
|---|---|
| Spilogale gracilis | Spilogale gracilis |
Enumerated domain for attribute: SEASON
| Code | Description |
|---|---|
| wet | scat samples collected during the wet season (September - May) |
| dry | scat samples collected during the dry season (June - August) |
Enumerated domain for attribute: AMPHIBIA
| Code | Description |
|---|---|
| taxonomic class Amphibia were not detected in scat sample | |
| 1 | taxonomic class Amphibia were detected in scat sample |
Enumerated domain for attribute: AVES
| Code | Description |
|---|---|
| taxonomic class Aves were not detected in scat sample | |
| 1 | taxonomic class Aves were detected in scat sample |
Enumerated domain for attribute: MAMMALIA
| Code | Description |
|---|---|
| taxonomic class Mammalia were not detected in scat sample | |
| 1 | taxonomic class Mammalia were detected in scat sample |
Enumerated domain for attribute: REPTILIA
| Code | Description |
|---|---|
| taxonomic class Reptilia were not detected in scat sample | |
| 1 | taxonomic class Reptilia were detected in scat sample |
Enumerated domain for attribute: GASTROPODA
| Code | Description |
|---|---|
| taxonomic class Gastropoda were not detected in scat sample | |
| 1 | taxonomic class Gastropoda were detected in scat sample |
Enumerated domain for attribute: ARACHNIDA
| Code | Description |
|---|---|
| taxonomic class Arachnida were not detected in scat sample | |
| 1 | taxonomic class Arachnida were detected in scat sample |
Enumerated domain for attribute: MYRIAPODA
| Code | Description |
|---|---|
| taxonomic class Myriapoda were not detected in scat sample | |
| 1 | taxonomic class Myriapoda were detected in scat sample |
Enumerated domain for attribute: INSECTA
| Code | Description |
|---|---|
| taxonomic class Insecta were not detected in scat sample | |
| 1 | taxonomic class Insecta were detected in scat sample |
Enumerated domain for attribute: STREPTOPHYTA
| Code | Description |
|---|---|
| taxonomic class Streptophyta were not detected in scat sample | |
| 1 | taxonomic class Streptophyta were detected in scat sample |
Enumerated domain for attribute: TREATMENT
| Code | Description |
|---|---|
| CT | Commercial Thinning |
| CC | Clearcut |
| NA | No known logging occurred within the last 100 years |
Enumerated domain for attribute: CLASS
| Code | Description |
|---|---|
| 1 | stand logged 0-40 years ago |
| 2 | stand logged 41-80 years ago> 100 years |
| 3 | stand logged > 100 years ago |
Enumerated domain for attribute: HJA
| Code | Description |
|---|---|
| site is outside of the HJ Andrews Experimental Forest boundary | |
| 1 | site is within the HJ Andrews Experimental Forest boundary |
Enumerated domain for attribute: LOGGED
| Code | Description |
|---|---|
| location of scat collected was not within a logged area | |
| 1 | location of scat collected was within a logged area |